NXQ_00209

rq turtle/ttl

• PTM
• glycosylation
• isoforms
• sequence
• tutorial

Glycosylation sites and cross links positions on SwissProt canonical isoforms

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>

SELECT DISTINCT ?entry ?iso ?ptmtype ?pos ?modres WHERE {
?entry :isoform ?iso.
?iso :swissprotDisplayed true .
?iso :sequence / :chain ?seq .
?iso :ptm ?ptm.
?ptm :term ?modterm.
?ptm :start ?pos.
bind (substr(?seq,?pos,1) as ?modres)	.
{
?ptm a :GlycosylationSite .
bind("glyco" as ?ptmtype)
}
union
{
?ptm a :CrossLink .
bind("cross-link" as ?ptmtype)
}
}
order by ?iso
#limit 100