neXtProt/NXQ_00257

Frequent variants at a PTM site

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

select  distinct ?entry (str(?ptmlab) as ?ptmlabSTR) ?varpos (str(?varAA) as ?varAASTR) ?freq where {
?entry :isoform ?iso .
?iso :swissprotDisplayed true .
?iso :variant ?var .
?var :start ?varpos .
?var :variation ?varAA .
?iso :ptm  ?ptm .
?ptm :term / rdfs:label ?ptmlab.
?ptm :start ?varpos .
?var :evidence ?ev .
?ev :allele-frequency ?freq .
filter (?freq > 0.5 )
}
order by desc(?freq)

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v9("?ev")
  v1("?freq"):::projected 
  v3("?iso")
  v7("?ptm")
  v8("?ptmlab"):::projected 
  v10("?ptmlabSTR")
  v4("?var")
  v6("?varAA"):::projected 
  v11("?varAASTR")
  v5("?varpos"):::projected 
  a1((" "))
  c4(["true^^xsd:boolean"]):::literal 
  f0[["?freq > '0.5^^xsd:decimal'"]]
  f0 --> v1
  v2 --":isoform"-->  v3
  v3 --":swissprotDisplayed"-->  c4
  v3 --":variant"-->  v4
  v4 --":start"-->  v5
  v4 --":variation"-->  v6
  v3 --":ptm"-->  v7
  v7 --":term"-->  a1
  a1 --"rdfs:label"-->  v8
  v7 --":start"-->  v5
  v4 --":evidence"-->  v9
  v9 --":allele-frequency"-->  v1
  bind1[/"str(?ptmlab)"/]
  v8 --o bind1
  bind1 --as--o v10
  bind2[/"str(?varAA)"/]
  v6 --o bind2
  bind2 --as--o v11