neXtProt/NXQ_00285

Proteins that have an interaction mapping region that contains the sequence 'ERLI'

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

select distinct ?entry (str(?gen) as ?gene)  where {
  ?entry :isoform ?iso; :gene / :name / rdfs:label ?gen .
  ?iso :swissprotDisplayed true; :interactionMapping ?itm .
  ?itm :start ?its; :end ?ite .
  ?iso :sequence / :chain ?seq.
  bind (substr(?seq, ?its, ?ite-?its+1) as ?itseq)
  filter (contains(?itseq,"ERLI"))
} order by ?entry

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?entry"):::projected 
  v4("?gen"):::projected 
  v9("?gene")
  v3("?iso")
  v7("?ite")
  v5("?itm")
  v6("?its")
  v9("?itseq")
  v8("?seq")
  a1((" "))
  a2((" "))
  a3((" "))
  c7(["true^^xsd:boolean"]):::literal 
  f0[["contains(?itseq,'ERLI')"]]
  f0 --> v9
  v1 --":isoform"-->  v3
  v1 --":gene"-->  a1
  a1 --":name"-->  a2
  a2 --"rdfs:label"-->  v4
  v3 --":swissprotDisplayed"-->  c7
  v3 --":interactionMapping"-->  v5
  v5 --":start"-->  v6
  v5 --":end"-->  v7
  v3 --":sequence"-->  a3
  a3 --":chain"-->  v8
  bind1[/"substring(?seq,?its,?ite - ?its + '+1^^xsd:integer')"/]
  v8 --o bind1
  v6 --o bind1
  v7 --o bind1
  bind1 --as--o v9
  bind2[/"str(?gen)"/]
  v4 --o bind2
  bind2 --as--o v9