neXtProt/NXQ_00286

Protein domains or regions that frequently occur in interaction mappings

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

SELECT DISTINCT (str(?rlab) as ?rlab1) (count(distinct ?itid) as ?itcnt) WHERE {
 ?entry :isoform ?iso; :gene / :name / rdfs:label ?gen .
 ?iso :swissprotDisplayed true; :interactionMapping ?itmap .
 ?itmap :entryAnnotationId ?itid; :start ?its; :end ?ite .
 bind(?ite - ?its + 1 as ?itlen)
 ?iso :region ?reg .
 ?reg :start ?rs; :end ?re; :term ?rterm .
 ?rterm rdfs:label ?rlab .
 bind(?re - ?rs + 1 as ?rlen)
 filter (?rs >= ?its - 15 && ?re <= ?ite + 15)
 filter(xsd:float(?itlen) / xsd:float(?rlen) < 2.0)
} group by ?rlab having(count(distinct ?itid) >= 10)
order by desc(?itcnt)

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v16("?_anon_aaf95e3c346c4c97af230d5bcfeba8ab4819")
  v8("?entry")
  v10("?gen")
  v9("?iso")
  v18("?itcnt")
  v7("?ite")
  v12("?itid"):::projected 
  v13("?itlen")
  v11("?itmap")
  v5("?its")
  v6("?re")
  v13("?reg")
  v15("?rlab"):::projected 
  v17("?rlab1")
  v16("?rlen")
  v4("?rs")
  v14("?rterm")
  a2((" "))
  a3((" "))
  a1((" "))
  c9(["true^^xsd:boolean"]):::literal 
  f0[[" >= '10^^xsd:integer'"]]
  f0 --> a1
  f1[["http://www.w3.org/2001/XMLSchema#float(?itlen) / http://www.w3.org/2001/XMLSchema#float(?rlen) < '2.0^^xsd:decimal'"]]
  f1 --> v13
  f1 --> v16
  f2[["?rs >= ?its - '15^^xsd:integer'?re <= ?ite + '15^^xsd:integer'"]]
  f2 --> v4
  f2 --> v5
  f2 --> v6
  f2 --> v7
  v8 --":isoform"-->  v9
  v8 --":gene"-->  a2
  a2 --":name"-->  a3
  a3 --"rdfs:label"-->  v10
  v9 --":swissprotDisplayed"-->  c9
  v9 --":interactionMapping"-->  v11
  v11 --":entryAnnotationId"-->  v12
  v11 --":start"-->  v5
  v11 --":end"-->  v7
  bind3[/"?ite - ?its + '1^^xsd:integer'"/]
  v7 --o bind3
  v5 --o bind3
  bind3 --as--o v13
  v9 --":region"-->  v13
  v13 --":start"-->  v4
  v13 --":end"-->  v6
  v13 --":term"-->  v14
  v14 --"rdfs:label"-->  v15
  bind4[/"?re - ?rs + '1^^xsd:integer'"/]
  v6 --o bind4
  v4 --o bind4
  bind4 --as--o v16
  bind7[/"count(?itid)"/]
  v12 --o bind7
  bind7 --as--o v16
  bind8[/"str(?rlab)"/]
  v15 --o bind8
  bind8 --as--o v17
  bind9[/"count(?itid)"/]
  v12 --o bind9
  bind9 --as--o v18