neXtProt/NXQ_00289

KEGG and Reactome pathway names

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX source: <http://nextprot.org/rdf/source/>

SELECT DISTINCT ?src (str(?pathwayname) as ?pw) WHERE {
 ?entry :isoform / :pathway ?pathannot .
 ?pathannot rdfs:comment ?pathwayname; :evidence / :assignedBy ?src.
 filter(?src = source:Reactome || ?src = source:KEGG_PTW)
} order by ?pathwayname

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?entry")
  v4("?pathannot")
  v1("?pathwayname"):::projected 
  v5("?pw")
  v2("?src"):::projected 
  a1((" "))
  a2((" "))
  f0[["(?src = ':source/Reactome' || ?src = ':source/KEGG_PTW')"]]
  f0 --> v2
  v3 --":isoform"-->  a1
  a1 --":pathway"-->  v4
  v4 --"rdfs:comment"-->  v1
  v4 --":evidence"-->  a2
  a2 --":assignedBy"-->  v2
  bind1[/"str(?pathwayname)"/]
  v1 --o bind1
  bind1 --as--o v5