A set of SPARQL examples that are used in different SIB resources
UniPathway and related GO
PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct (str(?plab) as ?uniplab) (str(?golab) as ?GOlab) where
{
?entry :isoform / :pathway ?p.
?p :evidence / :assignedBy source:Uniprot .
?p rdfs:comment ?plab.
?p :term / :related ?gorel .
filter(contains(str(?gorel),"GO_"))
?gorel rdfs:label ?golab .
}
order by ?plab
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v7("?GOlab")
v3("?entry")
v5("?golab"):::projected
v2("?gorel")
v4("?p")
v1("?plab"):::projected
v6("?uniplab")
a1((" "))
a2((" "))
a3((" "))
c6([":source/Uniprot"]):::iri
f0[["contains(str(?gorel),'GO_')"]]
f0 --> v2
v3 --":isoform"--> a1
a1 --":pathway"--> v4
v4 --":evidence"--> a2
a2 --":assignedBy"--> c6
v4 --"rdfs:comment"--> v1
v4 --":term"--> a3
a3 --":related"--> v2
v2 --"rdfs:label"--> v5
bind1[/"str(?plab)"/]
v1 --o bind1
bind1 --as--o v6
bind2[/"str(?golab)"/]
v5 --o bind2
bind2 --as--o v7