neXtProt/NXQ_09002

Check there are no non-standard amino acid terms with no entry associated

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?nstdaa where {
  ?nstdaa a :NonStandardAminoAcidCv .
  filter not exists {?member :isoform /:selenocysteine / :term ?nstdaa .}
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?member")
  v2("?nstdaa"):::projected 
  a1((" "))
  a2((" "))
  c5([":NonStandardAminoAcidCv"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":isoform"-->  e0a1
    e0a1 --":selenocysteine"-->  e0a2
    e0a2 --":term"-->  e0v2
    e0v1("?member"):::projected 
    e0v2("?nstdaa"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> v2
  v1 --":isoform"-->  a1
  a1 --":selenocysteine"-->  a2
  a2 --":term"-->  v2
  v2 --"a"-->  c5