neXtProt/NXQ_09038

Check there are no entries with GO biological process annotations with evidence NOT from the GO Consortium or neXtProt

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry ?src where {
  ?entry :isoform ?iso.
  ?iso :goBiologicalProcess /:evidence /:assignedBy ?src.
  filter ( ?src not in (source:AgBase,
source:Alzheimers_University_of_Toronto,
source:ARUK-UCL,
source:BHF-UCL,
source:CACAO,
source:CAFA,
source:DFLAT,
source:dictyBase,
source:Ensembl,
source:FlyBase,
source:GDB,
source:GO_central,
source:GOC,
source:HGNC,
source:HGNC-UCL,
source:IntAct,
source:InterPro,
source:LIFEdb,
source:MGI,
source:MTBbase,
source:NTNU_SB,
source:ParkinsonsUK-UCL,
source:PINC,
source:Reactome,
source:RGD,
source:Roslin_Institute,
source:SGD,
source:SynGO,
source:SynGO-UCL,
source:SYSCILIA_CCNET,
source:Uniprot,
source:WB,
source:YuBioLab,
source:NextProt))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v3("?iso")
  v1("?src"):::projected 
  a1((" "))
  a2((" "))
  f0[["?src != ':source/AgBase'?src != ':source/Alzheimers_University_of_Toronto'?src != ':source/ARUK-UCL'?src != ':source/BHF-UCL'?src != ':source/CACAO'?src != ':source/CAFA'?src != ':source/DFLAT'?src != ':source/dictyBase'?src != ':source/Ensembl'?src != ':source/FlyBase'?src != ':source/GDB'?src != ':source/GO_central'?src != ':source/GOC'?src != ':source/HGNC'?src != ':source/HGNC-UCL'?src != ':source/IntAct'?src != ':source/InterPro'?src != ':source/LIFEdb'?src != ':source/MGI'?src != ':source/MTBbase'?src != ':source/NTNU_SB'?src != ':source/ParkinsonsUK-UCL'?src != ':source/PINC'?src != ':source/Reactome'?src != ':source/RGD'?src != ':source/Roslin_Institute'?src != ':source/SGD'?src != ':source/SynGO'?src != ':source/SynGO-UCL'?src != ':source/SYSCILIA_CCNET'?src != ':source/Uniprot'?src != ':source/WB'?src != ':source/YuBioLab'?src != ':source/NextProt'"]]
  f0 --> v1
  v2 --":isoform"-->  v3
  v3 --":goBiologicalProcess"-->  a1
  a1 --":evidence"-->  a2
  a2 --":assignedBy"-->  v1