NXQ_09168

rq turtle/ttl

• QC
• quality
• evidence
• cellular component

Check there are no entries with GO cellular component annotations with evidence from FlyBase of quality SILVER and evidence code not IBA, IEP, HMP, HDA or HEP

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:goCellularComponent /:evidence ?ev.
  ?ev :assignedBy source:FlyBase.
  ?ev :quality :SILVER.
  ?ev :evidenceCode ?eco.
  filter ( ?eco not in ( cv:ECO_0000318,cv:ECO_0000270,cv:ECO_0007001,cv:ECO_0007005,cv:ECO_0007007 ))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v2("?entry"):::projected 
  v3("?ev")
  a1((" "))
  a2((" "))
  c10([":source/FlyBase"]):::iri 
  c12([":SILVER"]):::iri 
  f0[["?eco != ':terminology/ECO_0000318'?eco != ':terminology/ECO_0000270'?eco != ':terminology/ECO_0007001'?eco != ':terminology/ECO_0007005'?eco != ':terminology/ECO_0007007'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":goCellularComponent"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c10
  v3 --":quality"-->  c12
  v3 --":evidenceCode"-->  v1