neXtProt/NXQ_09288

Check there are no entries with modified residue annotations from neXtProt for which the evidence code is NOT mass spectrometry evidence, experimental evidence or sequence similarity evidence used in manual assertion

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:modifiedResidue /:evidence ?ev1.
  ?ev1 :assignedBy source:NextProt.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001096,cv:ECO_0000006,cv:ECO_0000250))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c8([":source/NextProt"]):::iri 
  f0[["?eco != ':terminology/ECO_0001096'?eco != ':terminology/ECO_0000006'?eco != ':terminology/ECO_0000250'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":modifiedResidue"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c8
  v3 --":evidenceCode"-->  v1