NXQ_09291

QC
evidence
ECO
pathway

Check there are no entries with pathway annotations from KEGG Pathway for which the evidence code is NOT curator inference used in manual assertion

Use at

https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry  where {
  ?entry :isoform /:pathway /:evidence ?ev1.
  ?ev1 :assignedBy source:KEGG_PTW.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0000305))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c6([":source/KEGG_PTW"]):::iri 
  f0[["?eco != ':terminology/ECO_0000305'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":pathway"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c6
  v3 --":evidenceCode"-->  v1