NXQ_09294

QC
evidence
ECO
mass spectrometry
peptide
proteomics

Check there are no entries with peptide mapping annotations from neXtProt (MDATA) for which the evidence code is NOT mass spectrometry evidence

Use at

https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:peptideMapping /:evidence ?ev1.
  ?ev1 :assignedBy ?src.
  filter ( ?src not in (source:MDATA_0004_2011,
source:MDATA_0023_2012,
source:MDATA_0033_2013,
source:PMID_20797634,
source:PMID_20140087,
source:PMID_20570859,
source:PMID_20687582,
source:PMID_20972266,
source:PMID_21139048,
source:PMID_21645671,
source:PMID_21890473,
source:PMID_22148984,
source:PMID_22865923,
source:PMID_23236377,
source:PMID_23266961,
source:PMID_23584533,
source:PMID_23955771,
source:PMID_24129315,
source:PMID_25038526,
source:PMID_25218447))
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001096))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v3("?entry"):::projected 
  v4("?ev1")
  v2("?src")
  a1((" "))
  a2((" "))
  f0[["?eco != ':terminology/ECO_0001096'"]]
  f0 --> v1
  f1[["?src != ':source/MDATA_0004_2011'?src != ':source/MDATA_0023_2012'?src != ':source/MDATA_0033_2013'?src != ':source/PMID_20797634'?src != ':source/PMID_20140087'?src != ':source/PMID_20570859'?src != ':source/PMID_20687582'?src != ':source/PMID_20972266'?src != ':source/PMID_21139048'?src != ':source/PMID_21645671'?src != ':source/PMID_21890473'?src != ':source/PMID_22148984'?src != ':source/PMID_22865923'?src != ':source/PMID_23236377'?src != ':source/PMID_23266961'?src != ':source/PMID_23584533'?src != ':source/PMID_23955771'?src != ':source/PMID_24129315'?src != ':source/PMID_25038526'?src != ':source/PMID_25218447'"]]
  f1 --> v2
  v3 --":isoform"-->  a1
  a1 --":peptideMapping"-->  a2
  a2 --":evidence"-->  v4
  v4 --":assignedBy"-->  v2
  v4 --":evidenceCode"-->  v1