neXtProt/NXQ_09294

Check there are no entries with peptide mapping annotations from neXtProt (MDATA) for which the evidence code is NOT mass spectrometry evidence

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:peptideMapping /:evidence ?ev1.
  ?ev1 :assignedBy ?src.
  filter ( ?src not in (source:MDATA_0004_2011,
source:MDATA_0023_2012,
source:MDATA_0033_2013,
source:PMID_20797634,
source:PMID_20140087,
source:PMID_20570859,
source:PMID_20687582,
source:PMID_20972266,
source:PMID_21139048,
source:PMID_21645671,
source:PMID_21890473,
source:PMID_22148984,
source:PMID_22865923,
source:PMID_23236377,
source:PMID_23266961,
source:PMID_23584533,
source:PMID_23955771,
source:PMID_24129315,
source:PMID_25038526,
source:PMID_25218447))
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001096))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v3("?entry"):::projected 
  v4("?ev1")
  v2("?src")
  a1((" "))
  a2((" "))
  f0[["?eco != ':terminology/ECO_0001096'"]]
  f0 --> v1
  f1[["?src != ':source/MDATA_0004_2011'?src != ':source/MDATA_0023_2012'?src != ':source/MDATA_0033_2013'?src != ':source/PMID_20797634'?src != ':source/PMID_20140087'?src != ':source/PMID_20570859'?src != ':source/PMID_20687582'?src != ':source/PMID_20972266'?src != ':source/PMID_21139048'?src != ':source/PMID_21645671'?src != ':source/PMID_21890473'?src != ':source/PMID_22148984'?src != ':source/PMID_22865923'?src != ':source/PMID_23236377'?src != ':source/PMID_23266961'?src != ':source/PMID_23584533'?src != ':source/PMID_23955771'?src != ':source/PMID_24129315'?src != ':source/PMID_25038526'?src != ':source/PMID_25218447'"]]
  f1 --> v2
  v3 --":isoform"-->  a1
  a1 --":peptideMapping"-->  a2
  a2 --":evidence"-->  v4
  v4 --":assignedBy"-->  v2
  v4 --":evidenceCode"-->  v1