neXtProt/NXQ_09297

Check there are no entries with SRM peptide mapping annotations from SRMAtlas for which the evidence code is NOT mass spectrometry evidence

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry ?eco where {
  ?entry :isoform /:srmPeptideMapping /:evidence ?ev1.
  ?ev1 :assignedBy source:SRMAtlas.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001096))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco"):::projected 
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c6([":source/SRMAtlas"]):::iri 
  f0[["?eco != ':terminology/ECO_0001096'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":srmPeptideMapping"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c6
  v3 --":evidenceCode"-->  v1