NXQ_09297

QC
evidence
ECO
mass spectrometry
peptide
proteomics

Check there are no entries with SRM peptide mapping annotations from SRMAtlas for which the evidence code is NOT mass spectrometry evidence

Use at

https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry ?eco where {
  ?entry :isoform /:srmPeptideMapping /:evidence ?ev1.
  ?ev1 :assignedBy source:SRMAtlas.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001096))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco"):::projected 
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c6([":source/SRMAtlas"]):::iri 
  f0[["?eco != ':terminology/ECO_0001096'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":srmPeptideMapping"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c6
  v3 --":evidenceCode"-->  v1