NXQ_09302

QC
evidence
ECO
variant

Check there are no entries with variant annotations with evidence from dbSNP and quality silver for which the evidence code is NOT nucleotide sequencing assay evidence

Use at

https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:variant /:evidence ?ev1.
  ?ev1 :assignedBy source:dbSNP.
  ?ev1 :quality :SILVER.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0000219))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c8([":SILVER"]):::iri 
  c6([":source/dbSNP"]):::iri 
  f0[["?eco != ':terminology/ECO_0000219'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":variant"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c6
  v3 --":quality"-->  c8
  v3 --":evidenceCode"-->  v1