A set of SPARQL examples that are used in different SIB resources
Check there are no entries with a keyword in the category "Technical term" that does not apply to human proteins
PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
select distinct ?entry where { # Include ?kw if result is not 0 to identify problem keyword
values ?kw {
cv:KW-0181 # Complete proteome
cv:KW-0952 # Extinct organism protein
cv:KW-0308 # Genetically modified food
cv:KW-0374 # Hybridoma
cv:KW-0614 # Plasmid
cv:KW-1185 # Reference proteome
}
?entry :isoform /:keyword /:term ?kw.
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?entry"):::projected
v1("?kw")
a1((" "))
a2((" "))
bind0[/VALUES ?kw/]
bind0-->v1
bind00([":terminology/KW-0181"])
bind00 --> bind0
bind01([":terminology/KW-0952"])
bind01 --> bind0
bind02([":terminology/KW-0308"])
bind02 --> bind0
bind03([":terminology/KW-0374"])
bind03 --> bind0
bind04([":terminology/KW-0614"])
bind04 --> bind0
bind05([":terminology/KW-1185"])
bind05 --> bind0
v2 --":isoform"--> a1
a1 --":keyword"--> a2
a2 --":term"--> v1