sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_09446

Check there are no entries with keywords corresponding to keyword categories

Use at

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?entry where {  # Include ?kw if result is not 0 to identify problem keyword
  values ?kw {
  cv:KW-9999 # Biological process
  cv:KW-9998 # Cellular component
  cv:KW-9997 # Coding sequence diversity
  cv:KW-9996 # Developmental stage
  cv:KW-9995 # Disease
  cv:KW-9994 # Domain
  cv:KW-9993 # Ligand
  cv:KW-9992 # Molecular function
  cv:KW-9991 # PTM
  cv:KW-9990 # Technical term
  }
  ?entry :isoform /:keyword /:term ?kw.
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v1("?kw")
  a1((" "))
  a2((" "))
  bind0[/VALUES ?kw/]
  bind0-->v1
  bind00([":terminology/KW-9999"])
  bind00 --> bind0
  bind01([":terminology/KW-9998"])
  bind01 --> bind0
  bind02([":terminology/KW-9997"])
  bind02 --> bind0
  bind03([":terminology/KW-9996"])
  bind03 --> bind0
  bind04([":terminology/KW-9995"])
  bind04 --> bind0
  bind05([":terminology/KW-9994"])
  bind05 --> bind0
  bind06([":terminology/KW-9993"])
  bind06 --> bind0
  bind07([":terminology/KW-9992"])
  bind07 --> bind0
  bind08([":terminology/KW-9991"])
  bind08 --> bind0
  bind09([":terminology/KW-9990"])
  bind09 --> bind0
  v2 --":isoform"-->  a1
  a1 --":keyword"-->  a2
  a2 --":term"-->  v1