neXtProt/NXQ_09448

Check there are no entries with a keyword in the category "Coding sequence diversity" that does not apply to human proteins

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?entry where {  # Include ?kw if result is not 0 to identify problem keyword
  values ?kw {
  cv:KW-0669 # Pyrrolysine
  cv:KW-1197 # Ribosomal skipping
  cv:KW-1159 # RNA suppression of termination
  cv:KW-1158 # RNA termination-reinitiation
  cv:KW-1156 # RNA translational shunting
  }
  ?entry :isoform /:keyword /:term ?kw.
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v1("?kw")
  a1((" "))
  a2((" "))
  bind0[/VALUES ?kw/]
  bind0-->v1
  bind00([":terminology/KW-0669"])
  bind00 --> bind0
  bind01([":terminology/KW-1197"])
  bind01 --> bind0
  bind02([":terminology/KW-1159"])
  bind02 --> bind0
  bind03([":terminology/KW-1158"])
  bind03 --> bind0
  bind04([":terminology/KW-1156"])
  bind04 --> bind0
  v2 --":isoform"-->  a1
  a1 --":keyword"-->  a2
  a2 --":term"-->  v1