sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_09449

Check there are no entries with a keyword in the category "Developmental stage" that does not apply to human proteins

Use at

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?entry where {  # Include ?kw if result is not 0 to identify problem keyword
  values ?kw {
  cv:KW-0244 # Early protein
  cv:KW-0293 # Fruiting body
  cv:KW-0364 # Heterocyst
  cv:KW-0426 # Late protein
  cv:KW-0477 # Merozoite
  cv:KW-0748 # Sporozoite
  cv:KW-1136 # Bradyzoite
  cv:KW-1137 # Tachyzoite
  cv:KW-1138 # Trophozoite
  }
  ?entry :isoform /:keyword /:term ?kw.
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v1("?kw")
  a1((" "))
  a2((" "))
  bind0[/VALUES ?kw/]
  bind0-->v1
  bind00([":terminology/KW-0244"])
  bind00 --> bind0
  bind01([":terminology/KW-0293"])
  bind01 --> bind0
  bind02([":terminology/KW-0364"])
  bind02 --> bind0
  bind03([":terminology/KW-0426"])
  bind03 --> bind0
  bind04([":terminology/KW-0477"])
  bind04 --> bind0
  bind05([":terminology/KW-0748"])
  bind05 --> bind0
  bind06([":terminology/KW-1136"])
  bind06 --> bind0
  bind07([":terminology/KW-1137"])
  bind07 --> bind0
  bind08([":terminology/KW-1138"])
  bind08 --> bind0
  v2 --":isoform"-->  a1
  a1 --":keyword"-->  a2
  a2 --":term"-->  v1