neXtProt/NXQ_09468

Check there are no entries with a subcellular location annotation that do not have the corresponding keyword

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?entry ?subcell ?kw where {
  ?entry :isoform ?iso.
  ?iso :subcellularLocation ?loc.
  filter not exists {?loc :negativeEvidence ?negev} # No negative evidence
  ?loc :term ?subcell.
  ?kw a :UniprotKeywordCv.
  ?subcell :related  ?kw.
  filter not exists {?entry :isoform /:keyword /:term ?kw} # No keyword
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?entry"):::projected 
  v5("?iso")
  v2("?kw"):::projected 
  v3("?loc")
  v4("?negev")
  v6("?subcell"):::projected 
  a1((" "))
  a2((" "))
  c7([":UniprotKeywordCv"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":isoform"-->  e0a1
    e0a1 --":keyword"-->  e0a2
    e0a2 --":term"-->  e0v2
    e0v1("?entry"):::projected 
    e0v2("?kw"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> v2
  v1 --":isoform"-->  a1
  a1 --":keyword"-->  a2
  a2 --":term"-->  v2
  f1[["not  "]]
  subgraph f1e1["Exists Clause"]
    e1v1 --":negativeEvidence"-->  e1v2
    e1v1("?loc"):::projected 
    e1v2("?negev"):::projected 
  end
  f1--EXISTS--> f1e1
  f1 --> v3
  f1 --> c4
  f1 --> v4
  v3 --":negativeEvidence"-->  v4
  v1 --":isoform"-->  v5
  v5 --":subcellularLocation"-->  v3
  v3 --":term"-->  v6
  v2 --"a"-->  c7
  v6 --":related"-->  v2