neXtProt/NXQ_09601

Check there are no entries with expression profile annotations with RNA-seq evidence (ECO:0000295) from HPA which is SILVER

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:expressionProfile /:evidence ?ev1.
  ?ev1 :assignedBy source:Human_protein_atlas.
  ?ev1 :evidenceCode cv:ECO_0000295.
  ?ev1 :quality :SILVER.
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?entry"):::projected 
  v2("?ev1")
  a1((" "))
  a2((" "))
  c7([":terminology/ECO_0000295"]):::iri 
  c9([":SILVER"]):::iri 
  c5([":source/Human_protein_atlas"]):::iri 
  v1 --":isoform"-->  a1
  a1 --":expressionProfile"-->  a2
  a2 --":evidence"-->  v2
  v2 --":assignedBy"-->  c5
  v2 --":evidenceCode"-->  c7
  v2 --":quality"-->  c9