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NXQ_09613

rq turtle/ttl

• QC
• HPA

Check there are no entries with subcellular location note annotations from HPA for which there is no subcellular location annotation from HPA

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform ?iso.
  ?iso :subcellularLocationNote /:evidence /:assignedBy source:Human_protein_atlas.
  filter not exists {?iso :subcellularLocation /:evidence /:assignedBy source:Human_protein_atlas}
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v1("?iso")
  a4((" "))
  a1((" "))
  a2((" "))
  a3((" "))
  c4([":source/Human_protein_atlas"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":subcellularLocation"-->  e0a1
    e0a1 --":evidence"-->  e0a2
    e0a2 --":assignedBy"-->  e0c4
    e0v1("?iso"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
    e0c4([":source/Human_protein_atlas"]):::iri 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> c4
  v1 --":subcellularLocation"-->  a1
  a1 --":evidence"-->  a2
  a2 --":assignedBy"-->  c4
  v2 --":isoform"-->  v1
  v1 --":subcellularLocationNote"-->  a3
  a3 --":evidence"-->  a4
  a4 --":assignedBy"-->  c4