neXtProt/NXQ_09641

Check there are no entries with a variant annotation with an xref starting with COSM that do not have evidence from COSMIC

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:variant /:evidence ?ev.
  ?ev :reference /:accession ?xref.
  filter (regex(?xref, "^COSM"))
  filter not exists {?ev :assignedBy source:Cosmic.}
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?entry"):::projected 
  v1("?ev")
  v2("?xref")
  a1((" "))
  a2((" "))
  a3((" "))
  c2([":source/Cosmic"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":assignedBy"-->  e0c2
    e0v1("?ev"):::projected 
    e0c2([":source/Cosmic"]):::iri 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> c2
  v1 --":assignedBy"-->  c2
  f1[["regex(?xref,'^COSM')"]]
  f1 --> v2
  v3 --":isoform"-->  a1
  a1 --":variant"-->  a2
  a2 --":evidence"-->  v1
  v1 --":reference"-->  a3
  a3 --":accession"-->  v2