neXtProt/NXQ_09643

Check there are no entries with a variant annotation with an xref starting with rs that do not have evidence from dbSNP or UniProt

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:variant /:evidence ?ev.
  ?ev :reference /:accession ?xref.
  filter (regex(?xref, "^rs"))
  ?ev :assignedBy ?src.
  filter ( ?src not in (source:dbSNP,source:Uniprot))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?entry"):::projected 
  v4("?ev")
  v1("?src")
  v2("?xref")
  a1((" "))
  a2((" "))
  a3((" "))
  f0[["?src != ':source/dbSNP'?src != ':source/Uniprot'"]]
  f0 --> v1
  f1[["regex(?xref,'^rs')"]]
  f1 --> v2
  v3 --":isoform"-->  a1
  a1 --":variant"-->  a2
  a2 --":evidence"-->  v4
  v4 --":reference"-->  a3
  a3 --":accession"-->  v2
  v4 --":assignedBy"-->  v1