neXtProt/NXQ_09644

Check there are no entries with a variant annotation with evidence from dbSNP that does not have an xref starting with rs

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:variant /:evidence ?ev.
  ?ev :assignedBy source:dbSNP.
  ?ev :reference /:accession ?xref.
  filter (!regex(?xref, "rs"))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v3("?ev")
  v1("?xref")
  a1((" "))
  a2((" "))
  a3((" "))
  c6([":source/dbSNP"]):::iri 
  f0[["not regex(?xref,'rs')"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":variant"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c6
  v3 --":reference"-->  a3
  a3 --":accession"-->  v1