sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_09646

Check there are no entries with the keyword KW-0225 (Disease mutation) that do not have a variant responsible for a disease

Use at

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>

select distinct ?entry where {
  ?entry :isoform /:keyword /:term cv:KW-0225.
  filter not exists {?entry :isoform /:variant /:disease ?dis.}
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?dis")
  v1("?entry"):::projected 
  a3((" "))
  a4((" "))
  a1((" "))
  a2((" "))
  c6([":terminology/KW-0225"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":isoform"-->  e0a1
    e0a1 --":variant"-->  e0a2
    e0a2 --":disease"-->  e0v2
    e0v2("?dis"):::projected 
    e0v1("?entry"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> v2
  v1 --":isoform"-->  a1
  a1 --":variant"-->  a2
  a2 --":disease"-->  v2
  v1 --":isoform"-->  a3
  a3 --":keyword"-->  a4
  a4 --":term"-->  c6