neXtProt/NXQ_09671

Check there are no entries with expression profile annotations with evidence from RNA-seq which are NOT from HPA or Bgee

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform ?iso.
  ?iso :expressionProfile /:evidence ?ev.
  ?ev :evidenceCode cv:ECO_0000295. # RNA-seq
  ?ev :assignedBy ?src.
  filter ( ?src not in (source:Human_protein_atlas,source:Bgee))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v4("?ev")
  v3("?iso")
  v1("?src")
  a1((" "))
  c7([":terminology/ECO_0000295"]):::iri 
  f0[["?src != ':source/Human_protein_atlas'?src != ':source/Bgee'"]]
  f0 --> v1
  v2 --":isoform"-->  v3
  v3 --":expressionProfile"-->  a1
  a1 --":evidence"-->  v4
  v4 --":evidenceCode"-->  c7
  v4 --":assignedBy"-->  v1