OrthoDB
- At the LCA level, find all human orthologs of mouse genes with name containing "MAPK", case-insensitive
- Find A.thaliana genes with their properties by a list of their gene symbols/names
- Find LCA in the OrthoDB tree for fruit fly and honey bee taxons
- Find URI and some properties of the orthologous group 6400at314295 by its short text label
- Find all OrthoDB species with attached OrthoDB organisms containing "drosophila" in the beginning of the taxonomic name
- Find all clades, i.e. taxonomic levels where orthologous groups were built on, with their Latin names and ranks underneath Bacteria, sorted alphabetically by rank, then name
- Find all genes with their name and description in the orthologous group 6400at314295
- Find all properties of the orthologous group 6400at314295 by its URI
- Find distribution of oxidation reactions catalyzed by genes arranged into several Eukaryota-level orthologous groups annotated with IPR002328 across species in Alveolata, Stramenopiles, Liliopsida and Coleoptera via cooperation with both Uniprot SPARQL endpoint and RHEA SPARQL endpoint
- Find genes having Uniprot xrefs in the group 6400at314295, along with their names fetched from Uniprot SPARQL endpoint
- Find genes with their properties by a list of their xrefs
- Find in any organsim under Gammaproteobacteria all genes containing word "protease", case-insensitive, anywhere in description
- Find most conservative single copy Danio rerio genes at the Vertebrata level
- Find orthologous group/s at any level containing protein with Uniprot id P12345
- Find orthologous human and mouse genes in the group(s) annotated with GO MF GO:0005164 (tumor necrosis factor receptor binding) and GO BP GO:0045739 (positive regulation of DNA repair)
- Find shortest rapidly evolving Caudovirales genes
- Find single-copy phyletic profile at all orthologous levels of STRING-anotated well known interacting genes pertinent to mouse gene/s from the OrthoDB orthologous group annotated with GO MF GO:0005164 (tumor necrosis factor receptor binding) and GO BP GO:0045739 (positive regulation of DNA repair)
- Find statistics on translated sequence length for genes matching both IPR002117 and GO:0008219
- Find zebrafish orthologs of disease-implicated (according to Nextprot SPARQL endpoint) human genes via Vertebrata-level orthogroup/s annotated with both IPR000719 (protein kinase domain) and GO:0048013 (ephrin receptor signaling pathway)
- List all xrefs attached to the groups annotated with at least three Interpro domains (IPR011990, IPR013083 and IPR001841)