About

This SPARQL endpoint contains all UniProt data. It is free to access and supports the SPARQL 1.1 Standard.

There are 186,631,773,819 triples in this release (2024_04). The query timeout is 45 minutes. All triples are available in the default graph. There are 22 named graphs.

Documentation

1. Classes and predicates defined by the UniProt consortium
2. Tutorial on using SPARQL with UniProt
3. Statistics and diagrams

Other SPARQL editors for SIB endpoints

• Editor for multiple endpoints
• UniProt - protein knowledgebase
• Bgee - gene expression
• OMA - Ortholog MAtrix
• SwissLipids - A knowledge resource for lipids and their biology
• Rhea - expert-curated knowledgebase of chemical and transport reactions of biological interest
• HAMAP - High-quality Automated and Manual Annotation of Proteins
• DBGI - The Digital Botanical Garden Initiative

You can check if an endpoint contains the necessary metadata here.