Course schedule
Day 1 - Containers
| Block | Start | End | subject |
|---|---|---|---|
| Block 1 | 9:00 AM | 10:30 AM | Introduction to containers |
| 10:30 AM | 11:00 AM | BREAK | |
| Block 2 | 11:00 AM | 12:30 PM | Managing containers and images |
| 12:30 PM | 1:30 PM | BREAK | |
| Block 3 | 1:30 PM | 3:00 PM | Working with dockerfiles |
| 3:00 PM | 3:30 PM | BREAK | |
| Block 4 | 3:30 PM | 5:00 PM | Running containers with apptainer |
Day 2 - Snakemake
| Block | Start | End | subject |
|---|---|---|---|
| Block 1 | 9:00 AM | 10:30 AM | Introduction to Snakemake |
| 10:30 AM | 11:00 AM | BREAK | |
| Block 2 | 11:00 AM | 12:30 PM | Generalising a Snakemake workflow |
| 12:30 PM | 1:30 PM | BREAK | |
| Block 3 | 1:30 PM | 3:00 PM | Decorating a Snakemake workflow |
| 3:00 PM | 3:30 PM | BREAK | |
| Block 4 | 3:30 PM | 4:30 PM | Snakemake, package managers and containers |
| 4:30 PM | 5:00 PM | Wrap-up & Open Q&A |