Course schedule
Note
Apart from the starting time the time schedule is indicative. Because we can not plan a course by the minute, in practice the time points will deviate.
Day 1
| block | start | end | topic | instructor | presentation | exercise |
|---|---|---|---|---|---|---|
| introduction | 9:15 | 9:45 | introduction to the course | Deepak Tanwar | Introduction | |
| block 1 | 9:45 | 10:30 | introduction to spatial omics | Joana Carlevaro-Fita | Spatial omics | |
| break | 10:30 | 11:00 | ||||
| block 2 | 10:45 | 12:30 | Setup, Space-ranger, and Data structure | Deepak Tanwar | Space-ranger and SpatialExperiment |
Setup, Exercise 1 |
| break | 12:30 | 13:30 | ||||
| block 3 | 1:30 | 3:00 | Quality control and normalization | Deepak Tanwar | QC and normalization | Exercise 2 |
| break | 3:00 | 3:30 | ||||
| block 4 | 3:30 | 5:15 | Feature selection, dimensionality reduction | Joana Carlevaro-Fita | Intermediate processing | Exercise 3 |
Day 2
| block | start | end | topic | instructor | presentation | exercise |
|---|---|---|---|---|---|---|
| block 1 | 9:15 | 10:30 | Clustering and annotation | Joana Carlevaro-Fita | Clustering | Exercise 4 |
| break | 10:30 | 11:00 | ||||
| block 2 | 11:00 | 11:45 | Spatial statistics | Mark Robinson | Statistical methods | |
| block 2 | 11:45 | 12:30 | Co-localization analysis | Martin Emons | Spatial stats | |
| break | 12:30 | 1:30 | ||||
| block 3 | 1:30 | 2:15 | Exercises: co-localisation analysis | Martin Emons | Exercise 5 | |
| block 3 | 2:15 | 3:00 | SVG and DSP for spatial data | Peiying Cai | SVG and DSP | |
| break | 3:00 | 3:30 | ||||
| block 4 | 3:30 | 4:15 | Exercise: SVG and DSP for spatial data | Peiying Cai | Exercise 6, Exercise 7 | |
| post-course | 4:15 | 4:30 | Post-course information | Deepak Tanwar | Closing remarks |