Course schedule
Note
Apart from the starting time the time schedule is indicative. Because we can not plan a course by the minute, in practice the time points will deviate.
Day 1
| block | start | end | subject | lecturer |
|---|---|---|---|---|
| introduction | 9:15 AM | 9:30 AM | Introduction | Geert van Geest |
| block 1 | 9:30 AM | 10:30 AM | Introduction scRNAseq | Geert van Geest |
| 10:30 AM | 11:00 AM | BREAK | ||
| block 2 | 11:00 AM | 12:30 PM | 10X and Cellranger | Geert van Geest |
| 12:30 PM | 1:30 PM | BREAK | ||
| block 3 | 1:30 PM | 3:00 PM | Analysis tools and QC | Geert van Geest |
| 3:00 PM | 3:30 PM | BREAK | ||
| block 4 | 3:30 PM | 5:00 PM | Group work | Joana Carlevaro-Fita |
Day 2
| block | start | end | subject | lecturer |
|---|---|---|---|---|
| block 1 | 9:15 AM | 10:30 AM | Normalization and scaling | Deepak Tanwar |
| 10:30 AM | 11:00 AM | BREAK | ||
| block 2 | 11:00 AM | 12:30 PM | Dimensionality reduction and Integration | Deepak Tanwar |
| 12:30 PM | 1:30 PM | BREAK | ||
| block 3 | 1:30 PM | 3:00 PM | Clustering | Joana Carlevaro-Fita |
| 3:00 PM | 3:30 PM | BREAK | ||
| block 4 | 3:30 PM | 5:00 PM | group work |
Day 3
| block | start | end | subject | lecturer |
|---|---|---|---|---|
| block 1 | 9:15 AM | 10:30 AM | Cell annotation | Joana Carlevaro-Fita |
| 10:30 AM | 11:00 AM | BREAK | ||
| block 2 | 11:00 AM | 12:30 PM | Differential gene expression and Enrichment analysis | Deepak Tanwar |
| 12:30 PM | 1:30 PM | BREAK | ||
| block 3 | 1:30 PM | 3:00 PM | group work | |
| 3:00 PM | 3:30 PM | BREAK | ||
| block 4 | 3:30 PM | 5:00 PM | group work + presentations | |
| post-course | 5:00 PM | 5:10 PM | Post-course information | Deepak Tanwar |