Course schedule
Note
Apart from the starting time the time schedule is indicative. Because we can not plan a course by the minute, in practice the time points will deviate.
Day 1
| block | start | end | subject | lecturer | |
|---|---|---|---|---|---|
| introduction | 9:15 AM | 9:30 AM | Introduction | Luciano Cascione | |
| block 1 | 9:30 AM | 10:30 AM | Introduction scRNAseq | Andrea Rinaldi | |
| 10:30 AM | 11:00 AM | BREAK | |||
| block 2 | 11:00 AM | 12:30 PM | 10X and Cellranger | Deepak Tanwar | |
| 12:30 PM | 1:30 PM | BREAK | |||
| block 3 | 1:30 PM | 3:00 PM | Analysis tools and QC | Deepak Tanwar | |
| 3:00 PM | 3:30 PM | BREAK | |||
| block 4 | 3:30 PM | 5:00 PM | Group work | Deepak Tanwar |
Day 2
| block | start | end | subject | lecturer | presentation |
|---|---|---|---|---|---|
| block 1 | 9:15 AM | 10:30 AM | Normalization and scaling | Deepak Tanwar | |
| 10:30 AM | 11:00 AM | BREAK | |||
| block 2 | 11:00 AM | 12:30 PM | Dimensionality reduction and Integration | Luciano Cascione | pdf, pdf |
| 12:30 PM | 1:30 PM | BREAK | |||
| block 3 | 1:30 PM | 3:00 PM | Clustering | Luciano Cascione | |
| 3:00 PM | 3:30 PM | BREAK | |||
| block 4 | 3:30 PM | 5:00 PM | group work |
Day 3
| block | start | end | subject | lecturer | presentation |
|---|---|---|---|---|---|
| block 1 | 9:15 AM | 10:30 AM | Cell annotation | Luciano Cascione | |
| 10:30 AM | 11:00 AM | BREAK | |||
| block 2 | 11:00 AM | 12:30 PM | Differential gene expression and Enrichment analysis | Luciano Cascione | |
| 12:30 PM | 1:30 PM | BREAK | |||
| block 3 | 1:30 PM | 3:00 PM | group work | ||
| 3:00 PM | 3:30 PM | BREAK | |||
| block 4 | 3:30 PM | 5:00 PM | group work + presentations | ||
| post-course | 5:00 PM | 5:10 PM | Post-course information | Deepak Tanwar |