Single cell transcriptomics
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Precourse preparations
Course schedule
day 1
Setup
Introduction & cellranger
Analysis tools and QC
Normalization and scaling
day 2
Dimensionality reduction
Integration
Clustering
Cell annotation
day 3
Differential gene expression
Enrichment analysis
Trajectory analysis
Advanced analyses
Trajectory analysis
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Material
Exercises
Trajectory analysis using Slingshot
Trajectory analysis with
monocle3
Trajectory analysis
Material
Lecture Alex Russel Lederer: