Proteins & Proteomes
UniProt
Examples
- Alternative protein full names for UniProtKB entries@en
- Break down reviewed human proteins by their protein-existence evidence leve...@en
- Compare the number of reviewed human UniProtKB entries (one canonical acces...@en
- Compare the number of reviewed proteins in two named taxonomic clades (Prim...@en
- Connect a taxonomic treatment collected by Plazi in their synospecies syste...
- Connect patents cited in UniProtKB with those in the patent database at EPO...@en
- Connect patents cited in UniProtKB with those in the patent database at EPO...@en
- Construct new triples of the type 'HumanProtein' from all human UniProtKB e...@en
- Count all isoforms for a given proteome@en
- Count distinct taxons linked to ChEBI in different ways via experimental an...
- Count how many reviewed human proteins have at least one experimentally det...@en
- Count how many times each of the 20 standard amino acids occurs in human TP...@en
- Count number of unique Rhea transport reactions annotated in reviewed UniPr...
- Count of unique Rhea reactions/Evidence code pairs annotated in different t...@en
- Count reviewed proteins classified anywhere under EC class 2.7 (transferase...@en
- Count reviewed proteins classified with the controlled-vocabulary keyword K...@en
- Count the number of Human Transporter Proteins@en
- Count the number of PANTHER families that have an experimentally confirmed ...@en
- Count the number of PANTHER families that have an experimentally confirmed ...
- Count the number of entries that are annotated to be related to venomous ac...
- Count the number of times a Rhea reaction was experimentally annotated in a...@en
- Distinct Enzymes in UniRef50 seed entries@en
- Extracting an UniProtKB primary accession from our IRIs. Is done with a bit...@en
- Find (Human Genetic) diseases, that are related to a natural variant on the...@en
- Find (Human genetic) diseases that are thought to be related to Enzymes, kn...@en
- Find Drosophila enzymes, that depend on more than one transcript (requires ...@en
- Find Drosophila proteins, that depend on more than one transcript (requires...@en
- Find EC (enzyme classification) numbers that have been replaced by a new EC...@en
- Find Gene Ontology terms that are a looser match to a UniProt subcellular-l...@en
- Find GeneID's crosslinked to more than one human or mouse UniProtKB entry@en
- Find Hydrolases (enzymes that catalyse the hydrolysis of various bonds) tha...@en
- Find UniParc records whose sequence point to the most database entries@en
- Find UniProt's subcellular-location ontology terms (up:Cellular_Component, ...@en
- Find UniProtKB entries with a transmembrane region, with an alanine in the ...@en
- Find UniProtKB entries with merged loci in Bordetella avium
- Find UniProtKB entries with more than 1 Topological domain annotation
- Find UniProtKB entry which has a protein name 'HLA class I histocompatibili...@en
- Find UniProtKB entry, or an UniProtKB entries domain or component which has...@en
- Find UniProtKB proteins involved in metabolic diseases using the MeSH conce...@en
- Find UniProtKB proteins which are cleaved and contain a domain or component...@en
- Find a protein's conflicting sequence: an alternative translation from a nu...@en
- Find a protein's cross-referenced CDS/nucleotide entry that disagrees with ...@en
- Find a protein's mass spectrometry annotation with its measured mass (up:me...@en
- Find a protein's modified (spliced) isoform sequence, the canonical sequenc...@en
- Find a protein's reported absorption maximum wavelength (up:maximum, in nm)...@en
- Find all Rhea (only small molecule) that are used in UniProtKB where the an...
- Find all names associated with UniProtKB entry P05067, and if the name is a...@en
- Find all natural variant annotations if associated via an evidence tag to a...@en
- Find all proteins linked to arachidonate (CHEBI:32395)@en
- Find all taxonomic records that describe species of the genus Homo.
- Find coiled-coil regions annotated on reviewed human proteins and their ext...@en
- Find compositionally-biased (low-complexity) regions annotated on reviewed ...@en
- Find diseases that are thought to be related to enzymes@en
- Find enzymes that have at least two transmembrane domains, whose 3D structu...@en
- Find enzymes with a Tyrosine (Y) as an active site@en
- Find enzymes, where the active site is a region affected by mutagenesis and...@en
- Find every broader subcellular location reachable from a given one (here, E...@en
- Find every subcellular location that is itself a kind of membrane, by reaso...@en
- Find glycosylation sites on reviewed human proteins, together with the modi...@en
- Find how often an article in PubMed was used in an evidence tag in a human ...@en
- Find human proteins that catalyze reactions where substrates or product hav...
- Find human transporter proteins in reviewed UniProtKB/Swiss-Prot, that are ...
- Find longest comment text associated with a UniProtKB natural variant annot...@en
- Find mouse homologs in OMABrowser of human enzymes that catalyze reactions ...@en
- Find non-reference proteomes and the organism and strain they were sequence...@en
- Find polymorphisms reported for proteins, i.e. population sequence variatio...@en
- Find propeptide regions of reviewed human proteins that are removed during ...@en
- Find protein-protein interactions flagged as xenologous (up:xeno), i.e. bet...@en
- Find proteins backed by a direct-submission citation, and which database (e...@en
- Find proteins with a name of a specific, distinct naming convention beyond ...@en
- Find proteomes that have been excluded from UniProtKB and the reason they w...@en
- Find publications that have a published erratum/correction, linking the ori...@en
- Find redox potential (E0) measurements reported for reviewed electron-trans...@en
- Find reviewed enzymes that both require Ca(2+) as a cofactor and have an an...@en
- Find reviewed enzymes with reported kinetic parameters (Michaelis-Menten co...@en
- Find reviewed human proteins that are annotated as self-interacting, i.e. k...@en
- Find reviewed human proteins that are part of a cancer-related Reactome pat...@en
- Find reviewed human proteins with a covalently attached lipid (e.g. palmito...@en
- Find reviewed human proteins with a cross-linked residue (e.g. a glycyl lys...@en
- Find reviewed human proteins with a known membrane orientation (e.g. cytopl...@en
- Find reviewed human proteins with a transit peptide targeting them to the m...@en
- Find reviewed human pseudokinases: proteins with an annotated protein kinas...@en
- Find reviewed human secreted proteins where the mature chain begins immedia...@en
- Find reviewed multifunctional (multi-catalytic) enzymes: proteins annotated...@en
- Find reviewed proteins classified with the Ion channel keyword that are als...@en
- Find reviewed proteins whose canonical isoform does not end in -1, ordered ...@en
- Find taxa with recorded name variants beyond their primary scientific name:...@en
- Find taxon records for which one reviewed UniProtKB/Swiss-Prot entry exists...
- Find taxon records that are known to have part of their life cycle in other...
- Find the Rhea and InterPro combinations in UniProtKB entries.@en
- Find the citations attached to human insulin (P01308) and, for each one, th...@en
- Find the co-occurence count of topological domain comment text in UniProtKB...@en
- Find the common taxon (the lowest taxon shared by all members) of the UniRe...@en
- Find the disulfide bonds of human insulin (P01308), the pair of residue pos...@en
- Find the extent (start and end position) of annotated protein domains on re...@en
- Find the full bibliographic record of a book chapter cited as evidence for ...@en
- Find the highest-resolution (lowest Angstrom value) experimentally determin...@en
- Find the human protein which contains an epitope VSTQ, where T is a phospho...@en
- Find the interaction partners of human tumor suppressor TP53 (P04637) and t...@en
- Find the membrane topology (e.g. peripheral membrane protein, lipid-anchor,...@en
- Find the most closely related proteomes and the similarity score behind tha...@en
- Find the optimum pH reported for the activity of reviewed human enzymes@en
- Find the optimum temperature or thermostability reported for the activity o...@en
- Find the orthologous proteins for UniProtKB entry P05067 using the OrthoDB ...
- Find the physiological reaction (the direction/reaction an enzyme actually ...@en
- Find the release number of the UniProt data that is currently being queried@en
- Find the similar proteins for UniProtKB entry P05067 sorted by UniRef clust...@en
- Find the tissue a protein was originally found to be expressed in from (up:...@en
- Find up:scientificName values that label more than one taxon. The same stri...@en
- Find where disease related proteins are known to be located in the cell@en
- Find which UniRef clusters a specific sequence (identified by its UniParc e...@en
- Find zinc finger regions in reviewed human DNA-binding proteins, with the z...@en
- For a given taxon (Escherichia coli K12), find its reference proteome and l...@en
- For a ncbi taxon identifier as a digit find it's reference proteome(s) if t...@en
- For human (taxon 9606), list every ancestor taxon in its lineage and whethe...@en
- For proteins cross-referenced to the AbasyAtlas database, reconstruct a wor...@en
- For reviewed human proteins, get the mass and MD5 checksum recorded on the ...@en
- For the human entry P05067 (Amyloid-beta precursor protein) find the gene s...@en
- For two accession numbers (ACs) find the GO term labels and group them into...@en
- Generate a draft human metabolome@en
- Generate a mapping table for PANTHER family - Rhea - UniProt Protein - ECO ...@en
- Get the list of UniProtKB entries for the chromosome of proteome UP00000062...
- Given a GO term, find all reviewed human proteins annotated with it. This i...@en
- Given a UniProt protein (human TP53, P04637), federate out to Ensembl's own...@en
- Given a UniProt protein (human TP53, P04637), list the Reactome pathways it...@en
- Given a batch list of UniProt accessions, retrieve one row per entry with i...@en
- Given a batch list of UniProt accessions, retrieve the amino acid sequence ...@en
- Given a batch of Enzyme Commission (EC) numbers, list the reviewed UniProt ...@en
- Given a batch of UniProt accessions, map each to its cross-referenced Ensem...@en
- Given a batch of UniProt accessions, resolve each to its Ensembl gene ID an...@en
- Given a batch of UniProt accessions, resolve each to its mnemonic entry nam...@en
- Given a batch of UniProt accessions, retrieve each one's KEGG gene cross-re...@en
- Given a batch of UniProt mnemonic identifiers (Entry Names, e.g. MTMR1_HUMA...@en
- Given a batch of human gene symbols (TP53, BRCA1, EGFR), resolve each to it...@en
- Given a strain-level proteome, find the taxon of the pan-proteome (species/...@en
- Given an UniProt chain identifier, generate the matching sequence as a FAST...@en
- How many distinct extinct organisms are represented in UniProtKB@en
- List Rhea reactions associated with an EC (enzyme classification).
- List Rhea reactions that are not associated with an EC (enzyme classificati...
- List Taxa Identifiers and the number of annotated Rhea reactions for each
- List Taxa Identifiers and the number of annotated Rhea reactions in each th...
- List UniProtKB proteins with genetic replicon that they are encoded on usin...@en
- List UniProtKB proteins with their associated gene and the gene's ORF label@en
- List UniProtKB proteins with their associated gene and the gene's names tha...@en
- List UniProtKB proteins with their associated gene and the gene's preffered...@en
- List UniProtKB proteins with their associated named gene@en
- List all InterPro member database signature match start and end for a speci...@en
- List all UniProtKB SwissProt entries, facilitation the transport of lipids.@en
- List all UniProtKB protein ID (mnemonic) for current UniProtKB entries.@en
- List all UniProtKB protein ID (mnemonic) that where used in the past for cu...@en
- List all UniProtKB proteins and if they are reviewed (Swiss-Prot) or unrevi...@en
- List all UniProtKB proteins and the diseases are annotated to be related.@en
- List all UniProtKB proteins annotated to be related to a genetic disease.@en
- List all human UniProtKB entries and their computationaly mapped potential ...
- List all human UniProtKB entries and their sequences, marking if the sequen...
- List all taxa in UniProt's taxonomy that have the taxonomic rank "genus", u...@en
- List every term in UniProt's subcellular-location ontology (up:Cellular_Com...@en
- List the created, last modified, and last sequence update dates for UniProt...@en
- List the proteins encoded by a gene that is located in an organelle other t...
- Look for enzymes catalyzing reactions with molecules similar to dopamine, w...@en
- Look for enzymes catalyzing reactions with molecules similar to dopamine.@en
- Map a selection of PDB identifiers plus chains to UniProtKB@en
- Map a selection of UniProtKB accession numbers (ACs) to HGNC identifiers an...@en
- Number of EC numbers described at protein, domain and component levels@en
- Number of complete EC numbers described at protein level, at domain level...@en
- Number of proteins with binding sites for metals or metal sulfur clusters (...@en
- Number of reviewed entries (UniProtKB/Swiss-Prot) that are related to kinas...@en
- Of reviewed human proteins, how many have a stored sequence starting with m...@en
- Predicates and objects, for a given UniParc accession as a subject@en
- Proteins with binding sites for ligands similar to heme@en
- Rabbit's proteins encoded by genes that are orthologous to Mouse's HBB-Y ge...@en
- Retrieve UniProtKB entries with sequences that are composed of fragments@en
- Retrieve all protein names, including peptide names, associated with UniPro...@en
- Retrieve drugs that target human enzymes involved in sterol metabolism (fed...@en
- Retrieve drugs that target human enzymes involved in sterol metabolism (fed...@en
- Retrieve entries and catalytic activities in the reviewed (UniProtKB/Swiss-...@en
- Retrieve glycosylation sites and glycans on human enzymes (federated with G...@en
- Retrieve human enzymes that metabolize sphingolipids and are annotated in C...@en
- Retrieve several different kinds of positional annotation (modified residue...@en
- Retrieve the UniProtKB proteins, their catalyzed Rhea reactions, their enco...@en
- Retrieve the free-text function description of human tumor suppressor TP53 ...@en
- Retrieve the rank and the scientific name of an taxonomic record. Not all t...
- Select Enzyme Classification (EC) classes that have a protein associated to...@en
- Select a mapping of UniProtKB enzymes to PDB entries using the UniProtKB cr...
- Select a mapping of UniProtKB to PDB entries using the UniProtKB cross-refe...@en
- Select all UniProtKB entries that were integrated on the 30th of November 2...@en
- Select all UniProtKB entries with annotated transmembrane regions and the r...@en
- Select all UniProtKB entries, and their organism and amino acid sequences (...
- Select all bacterial taxa and their scientific name from the UniProt taxono...
- Select all cross-references to external databases of the category '3D struc...
- Select all human UniProtKB entries with a sequence variant that leads to a ...@en
- Select all human UniProtKB entries with a sequence variant that leads to a ...@en
- Select all taxa from the UniProt taxonomy
- Select all triples that relate to the EMBL CDS entry AA089367.1:@en
- Select all triples that relate to the taxon that describes Homo sapiens in ...
- Select enzymes that have ligands known to have an allosteric effect@en
- Select reviewed UniProtKB entries (Swiss-Prot), and their recommended prote...@en
- Select the Gene Protein Reaction sets for Human (Ensembl Gene, Human UniPro...@en
- Select the UniProtKB entry with the mnemonic 'A4_HUMAN'
- Select the average number of cross-references to the PDB database of UniPro...
- Select the number of UniProtKB entries for each of the EC (Enzyme Commissio...@en
- Select the preferred gene name and disease annotation of all human UniProtK...@en
- Show for a given UniParc accessions which active UniProtKB entries have the...@en
- Sometimes it is known that a gene encoding a protein UniProtKB is located o...@en
- Starting from PDB entry pdb_00002bq0 (the extended, versioned wwPDB identif...@en
- Starting from human tumor suppressor TP53 (P04637), federate live with PDBj...@en
- The recommended protein full names for UniProtKB entries@en
- The recommended protein short names for UniProtKB entries@en
- Translate a selection of UniProtKB accession numbers into other options usi...@en
- Translate the global unique identifier for a UniProtKB record into other op...@en
- UniProt entries use ChEBI in the following annotations: Ligands, Cofactors ...
- UniProtKB/Swiss-Prot entries annotated with CC-CA/Rhea involving lipids@en
- Use ALLIE a service for Abbreviation / Long Form in Japanese and English to...
- Use the CORDIS EURIO Knowledge Graph in combination with UniProt to find th...
- Using a "genome" identifier in INSDC use the DDBJ sparql endpoint to find t...@en
- Was any UniProtKB entry integrated on the 9th of January 2013@en
- What are the Homo sapiens genes associated with cancer and their orthologs ...@en
- Where are the human genes encoding enzymes metabolizing N-acyl sphingosines...@en
- Which are the proteins associated with glioblastoma and the orthologs expre...@en
- list = EC numbers not linked to UniProt entries@en
- list = protein - components -ec@en